School of Biological Sciences

Publications of Academic Staff 2013

Journal publications

Academic staff in the School of Biological Sciences published 68 papers in scientific journals during 2013. These are listed below for each staff member (in alphabetical order).

In addition, eight full papers and nine abstracts were published in conference proceedings, and one book chapter. These are listed under “Books, book chapters and conference proceedings

Charles Bishop

Bishop, C.M. and Spivey, R.J. (2013) Integration of exercise response and allometric scaling in endotherms. Journal of Theoretical Biology 323:11-19. doi:10.1016/j.jtbi.2013.01.002

Spivey, R.J. and Bishop, C.M. (2013) Interpretation of body-mounted accelerometry in flying animals and estimation of biomechanical power. Journal of the Royal Society Interface 10 (87): doi:10.1098/rsif.2013.0404

Henk Braig

Siozios, S., Ioannidis, P., Klasson, L., Andersson, S.G.E., Braig, H.R., and Bourtzis, B. (2013) The diversity and evolution of Wolbachia ankyrin repeat domain genes. PLoS ONE 8, e55390.
Dubuffet, A., Smith, J.E., Solter, S., Perotti, M.A., Braig H.R. and Dunn, A.M. (2013) Specific detection and localization of microsporidian parasites in invertebrate hosts by using in situ hybridization. Applied and Environmental Microbiology 79, 385-388.
Mašán, P., Simpson, C., Perotti, M.A. and Braig, H.R. (2013) Mites parasitic on Australasian and African spiders found in the pet trade; a redescription of Ljunghia pulleinei Womersley. PLoS ONE 7, e39019.

Mark de Bruyn

Balke, M., Hendrich, L., Toussaint, E.F.A., Zhou, X., Von Rintelen, T., and de Bruyn, M. (2013) Suggestions for a molecular biodiversity assessment of South East Asian freshwater invertebrates. Lessons from the megadiverse beetles (Coleoptera). Journal of Limnology 72(s2): 61-68.
DOI: 10.4081/jlimnol.2013.s2.e4
de Bruyn, M et al. (2013) Time and space in biogeography: Response to Parenti & Ebach (2013). Journal of Biogeography 40(11): 2204-2206.
DOI: 10.1111/jbi.12166
Phillips, M.J., Page, T.J., de Bruyn, M., et al. (2013) The linking of plate tectonics and evolutionary divergence. Current Biology 23(14): R603-R605.
DOI: 10.1016/j.cub.2013.06.001
de Bruyn, M., et al. (2013) Paleo-drainage basins delineate priority areas for freshwater biodiversity conservation. Systematic Biology 62(3): 398-410.
DOI: 10.1093/sysbio/syt007

Gary Carvalho

van Wijk, SJ, Taylor, MI, Creer, S, Dreyer, C, Rodrigues, FM, Ramnarine, IW, van Oosterhout, C and Carvalho, GR (2013) Experimental harvesting of fish populations drives genetically-based shifts in body size and maturation. Frontiers in Ecology and the Environment 11:181–187; doi:10.1890/120229
de Bruyn; M, Ruber; L, Nylinder; S, Stelbrink; S, Lovejoy, NR; Lavoue, S;Tan, HH; Nugroho, E; Wowor, D;Ng, PKL; Azizah, MNS; von Rintelen, T; Hall, R; & Carvalho, GR (2013) Paleo-drainage Basin Connectivity Predicts Evolutionary Relationships across Three Southeast Asian Biodiversity Hotspots. Systematic Biology: 62 (3):398–410,
Pascoal, S, Carvalho, GR, Vasieva, O, Hughes, R, Cossins, A, Fang, Y, Ashelford, K, Olohan, L, Barroso, C, Mendo, S, Creer, S (2013) Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus. Molecular Ecology, 22, 1589-1608. (News and Views- Perspective in Molecular Ecology: Chapman RW & Guillette, LJ –Contaminants and impoSEX: transcriptomics of contaminated-induced sex change. Molecular Ecology, 22:1485-1487).
Hemmer-Hansen, J, Eg Nielsen, E, Therkildsen, NO, Taylor, MI, Ogden, R, Geffen, R, Bekkevold, D, Helyar, S, Pampoulie, S, Johansen, T, FishPopTrace Consortium, & Carvalho, G.J. (2013) A genomic island linked to ecotype divergence in Atlantic cod. Molecular Ecology, 22, 2653-2667
 Tysklind, N, Taylor, MI, Lyons, BT, Goodsir, F, McCarthy, ID & Carvalho, GR (2013) Population genetics provides new insights into biomarker prevalence in dab (Limanda limanda L.): a key marine biomonitoring species. Evolutionary Applications, DOI: 10.1111/eva.12074.
Heath, M. R., Culling, M. A., Crozier,W.W., Fox, C. J., Gurney,W. S. C., Hutchinson,W. F., Nielsen, E. E., O’Sullivan, M., Preedy, K. F., Righton, D. A., Speirs,, D. C., Taylor, M. I., Wright, P. J., and Carvalho, G. R. (2013) Combination of genetics and spatial modelling highlights the sensitivity of cod (Gadus morhua) population diversity in the North Sea to distributions of fishing. – ICES Journal of Marine Science, doi:10.1093/icesjms/fst185.
Montes I, Conklin D, Albaina A, Creer S, Carvalho GR, et al. (2013) SNP Discovery in European Anchovy (Engraulis encrasicolus, L) by High-Throughput Transcriptome and Genome Sequencing. PLoS ONE 8(8): e70051. doi:10.1371/journal.pone.0070051.  

Rita Cha

Cauwood JD, Johnson AL, Widger A, Cha RS. (2013) Recombinogenic conditions  influence partner choice in spontaneous mitotic recombination. PLoS Genetics 9(11):e1003931.
Baryshnikova A, VanderSluis B, Costanzo M, Myers CL, Cha RS, Andrews B, Boone C. (2013) Global linkage map connects meiotic centromere function to chromosome size in budding yeast. G3:Genes, Genomes, Genetics 3(10):1741-51.
Carballo JA, Panizza S, Serrentino ME, Johnson AL, Geymonat M, Borde V, Klein F, Cha RS. (2013). Budding yeast ATM/ATR control meiotic double-strand break (DSB) levels by down-regulating Rec114, an essential component of the DSB-machinery. PLoS Genetics 9(6):e1003545. 

Simon Creer

Briscoe, A.G., Goodacre, S., Masta, S., Taylor, M.I., Arnedo, M.A., Penney, D., Kenny, J. and Creer, S. (2013) Can long-range PCR be used to amplify genetically divergent mitochondrial genomes for comparative phylogenetics? A case study within spiders (Arthropoda: Araneae). PLoS One http://dx.plos.org/10.1371/journal.pone.0062404.
Pascoal, S., Carvalho, G.R., Vasieva, O., Hughes, R.N., Cossins, A., Fang, Y., Ashelford, K., Olohan, L., Barroso, C., Mendo, S, and Creer, S. (2013) Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus. Molecular Ecology 22: 1589-1608.
van Wijk, S.J., Taylor, M.I., Creer, S., Dreyer, C., Rodrigues, F.M., Ramnarine, I.W., van Oosterhout, C. and Carvalho, G.R. (2013) Experimental harvesting of fish populations drives genetically-based shifts in body size and maturation. Frontiers in Ecology and the Environment 2013; doi:10.1890/120229; available from: http://www.esajournals.org/toc/fron/0/0.
Montes I., Conklin D., Albaina A., Creer, S., Carvalho, G.R., Santos, M., Estonba, A. (2013) SNP Discovery in European Anchovy (Engraulis encrasicolus, L) by High-Throughput Transcriptome and Genome Sequencing. PloS One 8 (8), e70051.
Malhotra, A., Creer, S., Harris, J.B., Stöcklin, R., Favreau, P. and Thorpe, R.S. (2013) Predicting function from sequence in a large multifunctional toxin family
    Toxicon 72, 113-125.

Nathalie Fenner

Peacock, M., Evans, C.D., Fenner, N. & Freeman, C. (2013) Natural revegetation of bog pools after peatland restoration involving ditch blocking—The influence of pool depth and implications for carbon cycling. Ecological Engineering 57:297-301.
Fenner, N. & Freeman, C. (2013). Carbon preservation in humic lakes; a hierarchical regulatory pathway. Global change biology 19:775-784.

Oliver Fleck

Fleck, O., Vejrup-Hansen, R., Watson, A., Carr, A. M, Nielsen, O. and Holmberg, C. (2013) Spd1 accumulation causes genome instability independently of ribonucleotide reductase activity but functions to protect the genome when deoxynucleotide pools are elevated. Journal of Cell Science. 126:4985-4994.
DOI: 10.1242/jcs.132837

Chris Freeman

Hughes, D.D., Holliman, P.J., Jones, T & Freeman, C (2013) Temporal variations in dissolved organic carbon concentrations in upland and lowland lakes in North Wales.  Water and Environment Journal 27:275–283.
Curreli A., Wallace H. & Freeman C., Hollingham, M., Stratford, C.,  Johnson, H., L Jones L., (2013) Eco-hydrological requirements of dune slack vegetation and the implications of climate change. Science of the Total Environment 443:910-919
Moore, S., Evans, C.D., Page, S.E., Garnett, M.H., Jones, T.G. & Freeman, C., Hooijer A., Wiltshire A.J., Limin S.H.  and Gauci, V.  (2013) Deep instability of deforested tropical peatlands revealed by fluvial organic carbon fluxes;   Nature   493:660–663
Tang, R., Clark,J.M., Bond, T., Graham, N., Hughes, D. & Freeman,C. (2013). Assessment of potential climate change impacts on peatland dissolved organic carbon release and drinking water treatment from laboratory experiments. Environmental Pollution 173:270-277
Peacock, M., Evans, C.D., Fenner, N. & Freeman, C. (2013) Natural revegetation of bog pools after peatland restoration involving ditch blocking—The influence of pool depth and implications for carbon cycling. Ecological Engineering 57:297-301.
Fenner, N. & Freeman, C. (2013). Carbon preservation in humic lakes; a hierarchical regulatory pathway. Global change biology 19:775-784. 

Peter Golyshin

Kube M., Chernikova T.N., Al-Ramahi Y., Beloqui A., Lopez-Cortez N., Guazzaroni M.E., Heipieper H.J., Klages S., Kotsyurbenko O.R., Langer I., Nechitaylo T.Y.,  Fernández M., Juárez S., Ciordia S., Singer A., Kagan O., Egorova O., Petit P.A.,  Stogios P., Kim Y., Tchigvintsev A., Flick R., Denaro R., Genovese M., Albar J.P., Reva O.N., Martínez-Gomariz M., Tran H., Ferrer M., Savchenko A., Yakunin A.F., Yakimov M.M., Golyshina O.V.,  Reinhardt R. and Golyshin P.N. (2013). Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica. Nature Communications 4:2156.
Yakimov M.M., La Cono V., Slepak V.Z., La Spada G., Arcadi E., Messina E., Borghini M., Monticelli L.S., Rojo D., Barbas C., Golyshina O.V., Ferrer M., Golyshin P.N., Giuliano L. (2013). Microbial life in the lake Medee, the largest deep-sea salt-saturated formation. Scientific Reports 3:3554.
Golyshin P.N., Werner J., Chernikova T.N., Ferrer M., Yakimov M.M., Teeling H. and Golyshina O.V. MAMBA Scoientifiic Consortium. (2013). Genome sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T). Genome Announcements 1(2): e0014113.
Daffonchio D., Ferrer M., Mapelli F., Cherif A., Lafraya A., Malkawi H.I., Yakimov M.M., Abdel-Fattah Y.R., Blaghen M., Golyshin P.N., Kalogerakis N., Boon N., Magagnini M. and Fava F. (2013) Bioremediation of Southern Mediterranean oil polluted sites comes of age. New Biotechnology 30(6):743748
Alcaide M, Tornés J., Stogios P.J., Xu X., Gertler C., Di Leo R., Bargiela R., Lafraya A., Guazzaroni M.E., López-Cortés N., Chernikova T.N., Golyshina O.V., Nechitaylo T.Y., Plumeier I., Pieper D.H., Yakimov M.M., Savchenko A., Golyshin P.N., Ferrer M. (2013). Single residues dictate the co-evolution of dual esterases - MCP hydrolases from the a/b hydrolase family. Biochemical Journal 454(1):157-166.
Gwyther C., Jones D.L., Golyshin P.N., Edwards-Jones G., McKillen J., McNair I., McDonald J., Williams P. (2013). Bioreduction of sheep carcasses effectively contains and reduces pathogen levels under operational and simulated breakdown conditions. Environmental Science and Technology 47(10):5267-5275.  

Matthew Hayward

Jooste, E., Hayward, M. W., Pitman, R. & Swanepoel, L. (2013). Effect of prey mass and selection on predator carrying capacity estimates. European Journal of Wildlife Research 59:487-494.
Lunt I. D., Byrne M., Hellmann J. J., Mitchell N. J., Garnett S. T., Hayward M. W., Martin T. G., McDonald-Madden E., Williams S. E. & Zander K. K. (2013). Using assisted colonisation to conserve biodiversity and restore ecosystem function under climate change. Biological Conservation 157:172-177.
Winterbach, H., Winterbach, C. W., Somers, M. J. & Hayward, M. W. (2013). Key principles related to the conservation management of large carnivores in Africa. Mammal Review 43:89-110. 

Barrie Johnson

Hedrich, S. and Johnson, D.B. (2013) Acidithiobacillus ferridurans, sp. nov.; an acidophilic iron- , sulfur- and hydrogen-metabolizing chemolithotrophic Gammaproteobacterium. International Journal of Systematic and Evolutionary Microbiology 63:4018-4025.
Hedrich, S. and Johnson, D.B. (2103) Aerobic and anaerobic oxidation of hydrogen by acidophilic bacteria. FEMS Microbiology Letters 349:40-45. DOI: 10.1111/1574-6968.12290
Jones, R.M., Hedrich, S. and Johnson, D.B. (2013) Acidocella aromatica sp. nov.: an acidophilic heterotrophic alphaproteobacterium with unusual phenotypic traits. Extremophiles 17:841-850.
Osorio, H., Mangold, S., Denis, Y., Ňancucheo, I., Esparza, M., Johnson, D.B., Bonnefoy, V., Dopson, M., and Holmes, D.S. (2013) Anaerobic sulfur metabolism coupled to dissimilatory iron reduction in the extremophile Acidithiobacillus ferrooxidans. Applied & Environmental Microbiology 79:2172-2181.
Kay, C.M., Rowe, O.F., Rocchetti, L., Coupland, K.  Hallberg, K.B. and Johnson, D.B. (2013) Evolution of microbial “streamer” growths in an acidic, metal-contaminated stream draining an abandoned underground copper mine. Life 3, 189-210; doi:10.3390/life3010189
Johnson, D.B., Grail, B.M. and Hallberg, K.B. (2013) A new direction for biomining: extraction of metals by reductive dissolution of oxidized ores. Minerals 3:49-58 (DOI:10.3390/min3010049)
Johnson, D.B. (2013) Development and application of biotechnologies in the metal mining industry. Environmental Science and Pollution Research 11:7768-7776. DOI 10.1007/s11356-013-1482-7
Stankovic, S., Moric, I., Pavic, A., Vasiljevic, B., Johnson, D.B. and Cvetkovic, V. (2013) Investigation of the microbial diversity of an extremely acidic, metal-rich water body (lake Robule, Bor, Serbia). Journal of the Serbian Chemical Society 78:1-17.  doi: 10.2298/JSC130605071S
Johnson, D.B. (2013) Biomining: an established and dynamic biotechnology. Microbiology Indonesia 6:189-193.

Anita Malhotra

Malhotra A, Creer, S.,Harris, J.B., Stöcklin, R., Favreau, P. & Thorpe, R.S. (2013) Predicting function from sequence in a large multifunctional toxin family.  Toxicon, 72:113-25. Doi: 10.1016/j.toxicon.2013.06.019.
Böhm M., Collen B., Baillie J.E.M., Chanson J., Cox N., Hammerson G., Hoffmann M., Livingstone S.R. Ram M., Rhodin A.G.J., Stuart S.N., van Dijk P. P., Young B., Afuang L.E., Aghasyan A., Aguayo A.G., Aguilar C., Ajtic R., Akarsu F., Alencar L.R.V., Allison A., Ananjeva N., Anderson S., Andrén C., Ariano Sánchez D., Arredondo J.C., Auliya M., Austin C.C., Avci A., Baker P.J., Barreto-Lima A.F., Barrio-Amorós C.L., Basu D., Bates M.F., Batistella A., Bauer A., Bennett D., Böhme W., Broadley D., Brown R., Burgess J., Captain A., Carreira S., Castaneda M.R., Castro F., Catenazzi A., Cedeño-Vázquez J.R., Chapple D., Cheylan M., Cisneros-Heredia D.F., Cogalniceanu D., Cogger H., Corti C., Costa G.C., Couper P.J., Courtney T., Crnobrnja-Isailovic J., Crochet P.-A., Crother B., Cruz F., Daltry J., Daniels R.J.R., Das I., de Silva A., Diesmos A.C., Dirksen L., Doan T.M., Dodd K., Doody J.S., Dorcas M.E., Duarte de Barros Filho J., Egan V.T., El Mouden E.H., Embert D., Espinoza R.E., Fallabrino A., Feng X., Feng Z.-J., Fitzgerald L., Flores-Villela O., França  F.G.R., Frost D., Gadsden H., Gamble T., Ganesh S.R., Garcia M.A., García-Pérez J.E., Gatus J., Gaulke  M., Geniez P., Georges A., Gerlach J., Goldberg S., Gonzalez J.-C.T., Gower D.J., Grant T., Greenbaum E., Grieco C., Guo P., Hamilton A.M., Hammerson G., Hare K., Hedges B., Heideman N., Hilton-Taylor C., Hitchmough R., Hoffmann M., Hollingsworth  B., Hutchinson M., Ineich I., Iverson J., Jaksic  F.M., Jenkins R., Joger U., Jose  R., Kaska Y., Kaya U., Keogh J.S., Köhler G., Kuchling G., Kumlutaş Y., Kwet A., La Marca E., Lamar W., Lane A., Lardner B., Latta C., Latta G., Lau M., Lavin P., Lawson D., LeBreton M., Lehr E., Limpus D., Lipczynski  N., Livingstone S., Lobo A.S., López-Luna M.A., Luiselli L., Lukoschek V., Lundberg M., Lymberakis P., Macey R., Magnusson  W.E., Mahler D.L., Malhotra A., Mariaux J., Maritz B., Marques O.A.V., Márquez R., Martins M., Masterson G., Mateo J.A., Mathew R., Mathews N., Mayer G., McCranie J.R., Measey G.J., Mendoza-Quijano F., Menegon M., Métrailler S., Milton D.A., Montgomery C., Morato S.A.A., Mott T., Muñoz-Alonso A., Murphy J., Nguyen T.Q., Nilson G., Nogueira C., Nunez H., Orlov N., Ota H., Ottenwalder J., Papenfuss T., Pasachnik S., Passos P., Pauwels O.S.G., Pérez-Buitrago N., Pérez-Mellado V., Pianka E.R., Pleguezuelos J., Pollock C., Ponce-Campos P., Powell R., Pupin F., Quintero Díaz G.E., Radder R., Ramer J., Rasmussen A.R., Raxworthy C., Reynolds R., Richman N., Rico E.L., Riservato E., Rivas G., Rocha P.L.B., Rödel M.-O., Rodríguez Schettino L., Roosenburg W.M., Sadek R., Sanders K., Santos-Barrera G., Schleich H.H., Schmidt B.R., Schmitz A., Sharifi M., Shea G., Shi H., Shine R., Sindaco R., Slimani T., Somaweera R., Stafford P., Stuebing R., Sweet S., Sy E., Temple H., Tognielli M.F., Tolley K., Tolson P.J., Tuniyev B., Tuniyev S., Üzüm N., van Buurt G., Van Sluys M., Velasco A., Vences M., Veselý M., Vinke S., Vinke T., Vogel G., Vogrin M., Vogt R.C., Wearn O.R., Werner Y.L., Whiting M.J., Wiewandt T., Wilkinson J., Wilson B., Wren S., Zamin T., Zhou K., Zug G. (2013) The Conservation Status of the World’s Reptiles. Biological Conservation, 157, 372–385.

Michael Knapp

Dabney, J., Knapp, M., Glocke, I., Gansauge, M-T., Weihmann, A., Nickel, B., Valdiosera, C., Garcia, N.,  Pääbo, S., Arsuaga, J-L., Meyer, M. (2013) A complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultra-short DNA fragments. Proceedings of the National Academy of Sciences of the U.S.A. Early online, doi:10.1073/pnas.1314445110.

Stiller, M., Molak, M., Prost, S., Rabeder, G., Baryshnikov, G., Rosendahl, W., Münzel, S., Bocherens, H., Grandal-d'Anglade, A., Hilpert, B., Germonpré, M., Stasyk, O., Pinhasi, R., Tintori, A., Rohland, N., Mohandesan, E., Ho, S.Y.W., Hofreiter, M., Knapp, M. (2013) Mitochondrial DNA diversity and evolution of the Pleistocene cave bear complex. Quaternary International. Early online, http://dx.doi.org/10.1016/j.quaint.2013.09.023.

Collins, C.J., Rawlence, N.J., Worthy, T.H., Scofield, R.P., Tennyson, A.J.D., Smith, I., Knapp, M., Waters, J.M. (2013) Pre-human New Zealand sea lion (Phocarctos hookeri) rookeries on mainland New Zealand. Journal of the Royal Society of New Zealand. Early online. http://dx.doi.org/10.1080/03036758.2013.828761.  

James McDonald

Gwyther, C.L., Jones, D.L., Golyshin, P.N., Edwards-Jones, G., McKillen, J., McNair, I., McDonald, J.E., Williams, A.P. (2013) Bioreduction of sheep carcasses effectively contains and reduces pathogen levels under operational and simulated breakdown conditions. Environmental Science & Technology 47:5627-5275.  

Ramsay McFarlane

Feichtinger, J., Larcombe, L.D., McFarlane, R.J. (2013) Meta-analysis of expression of l(3)mbt tumour-associated germline genes supports the model that a soma-to-germline transition is a hallmark of human cancers. International Journal of Cancer doi: 10.1002/ijc.28577.
Sammut, J.S., Wakeman, J.A., Stuart, N., McFarlane, R.J. (2013) Cancer/Testis antigens and colorectal cancer. Journal of Genetic Syndromes and Gene Therapy 4:1000149. doi: 10.4172/2157-7412.1000149. 

Anil Shirsat

Roberts, K., Merkouroupoulos, G. and Shirsat, A.H. (2013) Identificationof promoter regions in the Arabidopsis thaliana atExt1 extensin gene controlling late responses to wounding and pathogen attack. Biologia Plantarum 57:341-350, 2013

Roger Thorpe

Surget-Groba Y. and R.S. Thorpe. 2013. A likelihood framework analysis of an island radiation: phylogeography of the Lesser Antillean gecko Sphaerodactylus vincenti, in comparison with the anole Anolis roquet.  Journal of Biogeography. 40:105-116. DOI: 10.1111/j.1365-2699.2012.02778.x
Malhotra, A., Creer, S., Harris, J.B., Stöcklin, R., Favreau, P. and Thorpe, R.S. (2013) Predicting function from sequence in a large multifunctional toxin family
    Toxicon 72, 113-125. 

Deri Tomos

Tandy, S.,  Brittain, S.R.,  Grail, B.M.,  McLeod, C.W., Paterson, E. &  Tomos, A.D. (2013) Fine scale measurement and mapping of uranium in soil solution in soil and plant-soil microcosms, with special reference to depleted uranium. Plant & Soil 368:471-482

George Turner

Jimoh A.A.,  Anetekhai, M.A., Cummings, S., Abanikanda, O.T.F, Turner, G.F.,  van Oosterhout, C. & Hänfling, B. (2013) Mismatch between molecular (mtDNA) and morphological classification of Macrobrachium prawns from Southern Nigeria: Cryptic freshwater species and brackish water morphotypes. Aquaculture 411:25-31. 
Tyers, A.M., Turner, G.F. (2013). Signal and preference divergence among populations of the non‐endemic basal Lake Malawi cichlid fish Astatotilapia calliptera (Perciformes: Cichlidae). Biological Journal of the Linnean Society 110:180-188.
Genner, M.J., Connell, E., Shechonge, A.,  Smith, A., Swanstrom, J.,  Mzighani, S., Mwijage, A., Ngatunga B.P. & Turner, G.F. (2013)   Nile Tilapia invades Lake Malawi catchment. African Journal of Aquatic Sciences, 38: Supplement 1:85-90.

Jane Wakeman

Sammut, J.S., Wakeman, J.A., Stuart, N., McFarlane, R.J. (2013) Cancer/Testis antigens and colorectal cancer. Journal of Genetic Syndromes and Gene Therapy 4:1000149. doi: 10.4172/2157-7412.1000149. 

Simon Webster

Webster, S.G., Wilcockson, D.C., Mrinalini and Sharpe, J.S. (2013). Bursicon and neuropeptide cascades during the ecdysis program of the shore crab, Carcinus maenas. General and Comparative Endocrinology 182: 54-64.
doi:10.1016/j.ygcen.2012.11.018
Turner, L.M, Webster, S.G. and Morris, S. (2013). Roles of crustacean hyperglycaemic hormone in ionic and metabolic homeostasis in the Christmas Island blue crab, Discoplax celeste. Journal of Experimental Biology 216:1191-1201. doi:10.1242/jeb.078527
Zhang, L., Hastings, M.H., Green, E.W., Tauber, E., Sladek, M., Webster, S.G., Kyriacou, C.P. and Wilcockson, D.C. (2103). Dissociation of circadian and circatidal timekeeping in the marine crustacean Eurydice pulchra. Current Biology 23:1-11. doi:10.1016/jcub.2013.08.038 

Nia Whiteley

Mackenzie, C.L., Bell, M.C., Birchenough, S.N.R., Culloty, S.C., Sanderson, W.G., Whiteley, N.M., and Malham, S.K. (2013) Future socio-economic and environmental sustainability of the Irish Sea requires a multi-disciplinary approach with industry and research collaboration, and cross-border partnership. Ocean and Coastal Management. 85A: 1-6. doi:10.1016/j.ocecoaman.2013.08.012.
Rastrick S.P.S and Whiteley N.M. (2013) Influence of natural thermal gradients on whole animal rates of protein synthesis in marine gammarid amphipods. PLoS ONE 8(3): e60050. doi:10.1371/journal.pone.0060050

Wolfgang Wüster

Vonk, F.J., N.R. Casewell, C.V. Henkel, A. Heimberg, R.J.R. McCleary, H.M.E. Kerkkamp, R. Vos, E. McGlinn, I. Guerreiro, J.J. Calvete, W. Wüster, J.M. Logan, A.E. Woods, R.A. Harrison, T.A. Castoe, A.P.J. de Koning, D.D. Pollock, C. Renjifo, R.B. Currier, D. Salgado, D. Pla, L. Sanz, H.P. Spaink, H.J. Jansen, A.S. Hyder, J.M.C. Ribeiro, P.W. Arntzen, G.E.E.J. van den Thillart, M. Boetzer, W. Pirovano, R.P. Dirks, D. Duboule, R.M. Kini & M.K. Richardson (2013) King cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proceedings of the National Academy of Sciences of the USA 110:20651-20656. www.pnas.org/cgi/doi/10.1073/pnas.1314702110
Casewell, N.R., W. Wüster, F.J. Vonk, R.A. Harrison & B.G. Fry (2013) Complex cocktails: the evolutionary novelty of venoms. Trends in Ecology and Evolution. 28:219-229. http://dx.doi.org/10.1016/j.tree.2012.10.020
Barlow, A., K. Baker, C.R. Hendry, L. Peppin, T. Phelps, K.A. Tolley, C.E. Wüster & W. Wüster (2013) Phylogeography of the widespread African puff adder (Bitis arietans) reveals multiple Pleistocene refugia in southern Africa. Molecular Ecology, 22:1134-1157. doi: 10.1111/mec.12157
Kaiser, H., B.I. Crother, C.M.R. Kelly, L. Luiselli, M. O’Shea, H. Ota, P. Passos, W.D. Schleip & W. Wüster (2013) Best practices: in the 21st Century, taxonomic decisions in herpetology are acceptable only when supported by a body of evidence and published via peer-review. Herpetological Review 44:8-23.

 

Books and books chapters and conference proceedings

Henk Braig

Perotti, M.A. and Braig, H.R. (2013) Soil, mites and dead bodies. In 'Animal, Plant and Soil Traces' Netherlands Forensic Institute, The Hague, The Netherlands; p. 27.
Kutshik, R.J., Perotti, M.A., Saloña-Bordas, M.I. and Braig, H.R. (2013) The changing features of the midgut epithelium for aging pupae of the blow fly Calliphora vicina In '10th Meeting of the European Association for Forensic Entomology (EAFE 2013)', Coimbra, Portugal, p. 89.

Mark de Bruyn

de Bruyn M, et al. (2013) Terrestrial and limnic insights into Southeast Asian biogeography. SAGE 2nd Southeast Asian Gateway Evolution Meeting. Museum für Naturkunde Berlin, Germany. Invited Plenary.

Gary Carvalho

Carvalho, G.R. (2013) Experimental Evolution in guppies. European Society of Evolutionary Biology
Carvalho, G.R. (2013) The contribution of genomics to the fishing industry – International Symposium: Genomics, Innovation and Economic Growth, Mexico City, Mexico. Invited Plenary.

Chris Freeman

Kang H, Kim SY, Freeman C. (2013) Enzyme Activities in Methods in Biogeochemistry of Wetlands, Delaune RD, Reddy KR, Richardson CJ, Megonigal JP (Eds) pp 373-384. Soil Science Society of America, Madison WI USA.
Freeman, C. (2013) The Relevance of the "Peatland Enzymic Latch" to Water, Food, Energy, & Innovation for a Sustainable World. International Annual Meeting of the Soil Science Society of America - William H. Patrick, Jr. Memorial Lectureship p161

Barrie Johnson

Hedrich, S. and Johnson, D.B. (2013) Evidence for widespread dissimilatory hydrogen metabolism among acidophilic bacteria. In 'Integration of Scientific and Industrial Knowledge on Biohydrometallurgy'. Advanced Materials Research825:202-205. Trans Tech Publications, Switzerland
Hedrich, S., du Plessis, C., Mora, N. and Johnson, D.B. (2013) Reduction and complexation of copper in a novel bioreduction system developed to recover base metals from mine process waters. In 'Integration of Scientific and Industrial Knowledge on Biohydrometallurgy'. Advanced Materials Research825:483-486. Trans Tech Publications, Switzerland
Ňancucheo, I. and Johnson, D.B. (2013) Sulfate removal from extremely acidic wastewaters using consortia of acidophilic sulfate-reducing bacteria. In 'Integration of Scientific and Industrial Knowledge on Biohydrometallurgy'. Advanced Materials Research825:487-490. Trans Tech Publications, Switzerland
Kay, C., Hedrich, S. and Johnson, D.B. (2013) Selective metal removal from Scandinavian mine waters using novel biomineralization technologies. In 'Integration of Scientific and Industrial Knowledge on Biohydrometallurgy'. Advanced Materials Research825:479-482. Trans Tech Publications, Switzerland
Falagán, C., Sánchez-España, F. J. and Johnson, D.B. (2013) Microbiological communities in two acidic mine pit lakes in the Iberian Pyrite Belt (IPB), Spain. In 'Integration of Scientific and Industrial Knowledge on Biohydrometallurgy'. Advanced Materials Research825:19-22. Trans Tech Publications, Switzerland
Talla, E., Hedrich, S., Ji, B., Johnson, D.B. and Bonnefoy, V. (2013) Genome analysis of the psychrotolerant acidophile Acidithiobacillus ferrivorans CF27. In 'Integration of Scientific and Industrial Knowledge on Biohydrometallurgy'. Advanced Materials Research825:145-148. Trans Tech Publications, Switzerland
Willis, G., Hedrich, S., Ñancucheo, I., Johnson, D.B. and Donati, E. (2013) Microbial diversity in acidic anaerobic sediments at the geothermal Caviahue-Copahue system, Argentina. In 'Integration of Scientific and Industrial Knowledge on Biohydrometallurgy'. Advanced Materials Research825:7-10. Trans Tech Publications, Switzerland.
Johnson, D.B. (2013) Resource recovery from waste waters: using biomineralisation for the selective recovery of metals from acid rock drainage and mine process waters. World Mining Congress Proceedings. Montreal, Canada (August 2013). Paper 803. Invited keynote
Johnson, D.B. (2013) Using bacteria to break and make minerals in acidic liquors:industrial and environmental implications. Proceedings: Minerals for Life: Overcoming Resource Constraints. Edinburgh, June 2013, p.68. Invited keynote

Wolfgang Wüster

Wüster, W., A. Barlow, L. Chirio, E. Greenbaum, C. Hall, I. Ineich, K. Jackson, Z.T. Nagy, R. Storey, J.-F. Trape & D.G. Broadley (2013) Mitochondrial and nuclear gene sequences and morphological data reveal unexpected diversity in the African forest cobra (Naja melanoleuca). Abstract 0116, Joint Meeting of Ichthyologists & Herpetologists, Albuquerque, 10-15 July 2013.
Wüster, W., A. Barlow & N. R. Casewell (2013) Why is snake venom so variable? Venoms 2013: Making Sense of Venoms in Health and Disease. St. Hilda’s College, Oxford, Sep. 2013.

 

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