Dr John Mulley

• The Evolution of Vertebrate ParaHox Genes DPhil (Oxford University)
• Biosystematics MSc (Imperial College London, UK)
• Genetics BSc (Liverpool University)

2018

• Inbred or Outbred? Genetic Diversity in Laboratory Rodent Colonies
  
  Brekke, T, Steele, K & Mulley, J 2018, 'Inbred or Outbred? Genetic Diversity in Laboratory Rodent Colonies' G3: Genes, Genomes, Genetics, vol. 8, no. 2, pp. 679-686 .

2017

• Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster
  
  Hargreaves, AD, Zhou, L, Christensen, J, Marletaz, F, Liu, S, Li, F, Jansen, PG, Spiga, E, Hansen, MT, Pedersen, SVH, Biswas, S, Seriwaka, K, Fox, BA, Taylor, WR, Mulley, J, Zhang, G, Heller, RS & Holland, PWH 2017, 'Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster' Proceedings of the National Academy of Sciences of the United States of America: PNAS, vol. 114, no. 29, pp. 7677–7682. DOI: 10.1073/pnas.1702930114

2016

• The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
  
  Braasch, I, Gehrke, AR, Smith, JJ, Kawasaki, K, Manousaki, T, Pasquier, J, Amores, A, Desvignes, T, Batzel, P, Catchen, J, Berlin, AM, Campbell, MS, Barrell, D, Martin, KJ, Mulley, JF, Ravi, V, Lee, AP, Nakamura, T, Chalopin, D, Fan, S, Wcisel, D, Cañestro, C, Sydes, J, Beaudry, FE, Sun, Y, Hertel, J, Beam, MJ, Fasold, M, Ishiyama, M, Johnson, J, Kehr, S, Lara, M, Letaw, JH, Litman, GW, Litman, RT, Mikami, M, Ota, T, Saha, NR, Williams, L, Stadler, PF, Wang, H, Taylor, JS, Fontenot, Q, Ferrara, A, Searle, SM, Aken, B, Yandell, M, Schneider, I, Yoder, JA, Volff, J, Meyer, A, Amemiya, CT, Venkatesh, B, Holland, PW, Guiguen, Y, Bobe, J, Shubin, NH, Di Palma, F, Alföldi, J, Lindblad-Toh, K & Postlethwait, JH 2016, 'The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons' Nature Genetics. DOI: 10.1038/ng.3526

2015

• Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing
  
  Hargreaves, AD & Mulley, JF 2015, 'Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing' PeerJ, pp. e1441. DOI: https://dx.doi.org/10.7717/peerj.1441
• A critique of the toxicoferan hypothesis
  
  Hargreaves, AD, Tucker, AS, Mulley, JF, Gopalakrishnakone, P (ed.) & Malhotra, M (ed.) 2015, A critique of the toxicoferan hypothesis. in Evolution of Venomous Animals and Their Toxins: Toxicology. Springer Netherlands, pp. 1-15. DOI: 10.1007/978-94-007-6727-0_4-1

2014

• Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function
  
  Mulley, JF, Hargreaves, AD, Hegarty, MJ, Heller, RS & Swain, MT 2014, 'Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function' BMC Genomics, vol. 15, no. 1074. DOI: 10.1186/1471-2164-15-1074
• Testing the Toxicofera: comparative reptile transcriptomics casts doubt on the single, early evolution of the reptile venom system
  
  Hargreaves, AD, Swain, MT, Logan, DW & Mulley, JF 2014, 'Testing the Toxicofera: comparative reptile transcriptomics casts doubt on the single, early evolution of the reptile venom system' Toxicon, vol. 92, pp. 140-156. DOI: 10.1016/j.toxicon.2014.10.004
• Genomic organisation of the seven ParaHox genes of coelacanths
  
  Mulley, JF & Holland, PW 2014, 'Genomic organisation of the seven ParaHox genes of coelacanths' Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, vol. 322, no. 6, pp. 352-358. DOI: 10.1002/jez.b.22513
• A plea for standardized nomenclature of snake venom toxins
  
  Hargreaves, AD & Mulley, JF 2014, 'A plea for standardized nomenclature of snake venom toxins' Toxicon, vol. 90, pp. 351-353. DOI: 10.1016/j.toxicon.2014.08.070
• Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins
  
  Hargreaves, AD, Swain, MT, Hegarty, MJ, Logan, DW & Mulley, JF 2014, 'Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins' Genome Biology and Evolution, vol. 6, no. 8, pp. 2088-2095. DOI: 10.1093/gbe/evu166

2010

• Parallel retention of Pdx2 genes in cartilaginous fish and coelcanths.
  
  Mulley, JF & Holland, PW 2010, 'Parallel retention of Pdx2 genes in cartilaginous fish and coelcanths.' Molecular Biology and Evolution, vol. 27, no. 10, pp. 2386-2391. DOI: 10.1093/molbev/msq121

2009

• Comparative genomics of chondrichthyan Hoxa clusters.
  
  Mulley, JF, Zhong, YF & Holland, PW 2009, 'Comparative genomics of chondrichthyan Hoxa clusters.' BMC Evolutionary Biology, vol. 9, pp. 218. DOI: 10.1186/1471-2148-9-218