2019

• Integrating field and laboratory approaches for ripple development in mixed sand-clay-EPS
  
  Baas, J, Baker, M, Malarkey, J, Bass, SJ, Manning, AJ, Hope, JA, Peakall, J, Lichtman, I, Ye, L, Davies, A, Parsons, DR, Paterson, DM & Thorne, PD 2019, 'Integrating field and laboratory approaches for ripple development in mixed sand-clay-EPS', Sedimentology. https://doi.org/10.1111/sed.12611
• The hiding-exposure effect revisited
  
  McCarron, CJ, Van Landeghem, KJJ, Baas, JH, Amoudry, LO & Malarkey, J 2019, 'The hiding-exposure effect revisited: A method to calculate the mobility of bimodal sediment mixtures', Marine Geology, vol. 410, pp. 22-31. https://doi.org/10.1016/j.margeo.2018.12.001

2018

• Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions
  
  Lichtman, ID, Baas, JH, Amoudry, LO, Thorne, PD, Malarkey, J, Hope, JA, Peakall, J, Paterson, DM, Bass, SJ, Cooke, RD, Manning, AJ, Davies, AG, Parsons, DR & Ye, L 2018, 'Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions', Geomorphology, vol. 315, pp. 17-32. https://doi.org/10.1016/j.geomorph.2018.04.016
• Application of a model of internal hydraulic jumps
  
  Thorpe, S, Malarkey, J, Voet, G, Alford, M, Girton, J & Carter, G 2018, 'Application of a model of internal hydraulic jumps', Journal of Fluid Mechanics, vol. 834, pp. 125-148. https://doi.org/10.1017/jfm.2017.646

2017

• The Effect of Clay Type on the Properties of Cohesive Sediment Gravity Flows and their Deposits
  
  Baker, M, Baas, J, Malarkey, J, Silva Jacinto, R, Craig, M, Kane, I & Barker, S 2017, 'The Effect of Clay Type on the Properties of Cohesive Sediment Gravity Flows and their Deposits', Journal of Sedimentary Research, vol. 87, no. 11, pp. 1176-1195. https://doi.org/10.2110/jsr.2017.63

2016

• Line vortices and the vacillation of Langmuir circulation
  
  Malarkey, J & Thorpe, S 2016, 'Line vortices and the vacillation of Langmuir circulation', Journal of Physical Oceanography, vol. 46, no. 7, pp. 2123-2141. https://doi.org/10.1175/JPO-D-16-0006.1
• Soil stabilization linked to plant diversity and environmental context in coastal wetlands
  
  Ford, H, Garbutt, A, Ladd, C, Malarkey, J & Skov, MW 2016, 'Soil stabilization linked to plant diversity and environmental context in coastal wetlands', Journal of Vegetation Science, vol. 27, no. 2, pp. 259-268. https://doi.org/10.1111/jvs.12367
• The role of biophysical cohesion on subaqueous bed form size
  
  Parsons, DR, Schindler, RJ, Hope, JA, Malarkey, J, Baas, JH, Peakall, J, Manning, AL, Ye, L, Simmons, S, Paterson, DM, Aspden, RJ, Bass, SJ, Davies, AG, Lichtman, ID & Thorne, PD 2016, 'The role of biophysical cohesion on subaqueous bed form size', Geophysical Research Letters, vol. 43, pp. 1566-1573. https://doi.org/10.1002/2016GL067667

2015

• Mixing efficiency of sediment and momentum above rippled beds under oscillatory flows
  
  Malarkey, J, Magar, V & Davies, AG 2015, 'Mixing efficiency of sediment and momentum above rippled beds under oscillatory flows', Continental Shelf Research, vol. 108, pp. 76-88. https://doi.org/10.1016/j.csr.2015.08.004
• Stratification in the presence of an axial convergent front: Causes and implications
  
  Howlett, ER, Bowers, DG, Malarkey, J & Jago, CF 2015, 'Stratification in the presence of an axial convergent front: Causes and implications', Estuarine, Coastal and Shelf Science, vol. 161, pp. 1-10. https://doi.org/10.1016/j.ecss.2015.04.003
• Sticky stuff: Redefining bedform prediction in modern and ancient environments
  
  Schindler, RJ, Parsons, DR, Ye, L, Hope, JA, Baas, JH, Peakall, J, Manning, AJ, Aspden, RJ, Malarkey, J, Simmons, S, Paterson, DM, Lichtman, ID, Davies, AG, Thorne, PD & Bass, SJ 2015, 'Sticky stuff: Redefining bedform prediction in modern and ancient environments', Geology. https://doi.org/10.1130/G36262.1
• The pervasive role of biological cohesion in bedform development
  
  Malarkey, J, Baas, JH, Hope, JA, Aspenden, RJ, Parsons, DR, Peakall, J, Peterson, DM, Schindler, RJ, Ye, L, Lichtman, ID, Bass, SJ, Davies, AG, Manning, AJ & Thorne, PD 2015, 'The pervasive role of biological cohesion in bedform development', Nature Communications, vol. 6, no. 6257. https://doi.org/10.1038/ncomms7257

2013

• A simple method to determine the settling velocity distribution from settling velocity tubes
  
  Malarkey, J, Jago, CF, Hubner, R & Jones, S 2013, 'A simple method to determine the settling velocity distribution from settling velocity tubes', Continental Shelf Research, vol. 56, pp. 82-89. https://doi.org/10.1016/j.csr.2013.01.018
• Bedform development in mixed sand–mud: The contrasting role of cohesive forces in flow and bed
  
  Baas, JH, Davies, AG & Malarkey, J 2013, 'Bedform development in mixed sand–mud: The contrasting role of cohesive forces in flow and bed', Geomorphology, vol. 182, pp. 19-32. https://doi.org/10.1016/j.geomorph.2012.10.025

2012

• Free-stream velocity descriptions under waves with skewness and asymmetry
  
  Malarkey, J & Davies, AG 2012, 'Free-stream velocity descriptions under waves with skewness and asymmetry', Coastal Engineering, vol. 68, pp. 78-95. https://doi.org/10.1016/j.coastaleng.2012.04.009
• A simple procedure for calculating the mean and maximum bed stress under wave and current conditions for rough turbulent flow based on Soulsby and Clarke's (2005) method
  
  Malarkey, J & Davies, AG 2012, 'A simple procedure for calculating the mean and maximum bed stress under wave and current conditions for rough turbulent flow based on Soulsby and Clarke's (2005) method', Computers and Geosciences, vol. 43, pp. 101-107. https://doi.org/10.1016/j.cageo.2012.02.020

2009

• Modelling and observation of oscillatory sheet-flow sediment transport.
  
  Malarkey, J, Pan, S, Li, M, O'Donoghue, T, Davies, AG & O'Connor, BA 2009, 'Modelling and observation of oscillatory sheet-flow sediment transport.', Ocean Engineering, vol. 36, no. 11, pp. 873-890. https://doi.org/10.1016/j.oceaneng.2009.05.003
• Measuring tidal hydrodynamics and bedform evolution in the Dee estuary
  
  Bolaños, R, Souza, AJ, Bell, P & Malarkey, J 2009, Measuring tidal hydrodynamics and bedform evolution in the Dee estuary. in Proceedings of the 6th Symposium on River, Coastal and Estuarine Morphodynamics (RCEM 2009): Santa Fe, Argentina, 21-25 Sep. 2009. vol. 2, CRC Press/Balkema, pp. 709-714.

2008

• 2DV modelling of sediment transport processes over full-scale ripples in regular asymmetric oscillatory flow.
  
  Van Der Werf, JJ, Magar, V, Malarkey, J, Guizien, K & O'Donoghue, T 2008, '2DV modelling of sediment transport processes over full-scale ripples in regular asymmetric oscillatory flow.', Continental Shelf Research, vol. 28, no. 8, pp. 1040-1056. https://doi.org/10.1016/j.csr.2008.02.007
• A Review of freestream descriptions and velocity and acceleration skewness
  
  Malarkey, J 2008, A Review of freestream descriptions and velocity and acceleration skewness: CAMS Report 2008-5. 2008 edn, Unknown.

2006

• A transport model of graded sands in the oscillatory sheet-flow regime
  
  Malarkey, J & Davies, A 2006, A transport model of graded sands in the oscillatory sheet-flow regime. in Proceedings of Coastal Dynamics ’05 held 4-8 April: Barcelona. 2006 edn, American Society of Civil Engineers, pp. 14.

2005

• Comparison between 2DV sediment transport models and measurements of suspended sediment dynamics over full-scale ripples in oscillatory flows
  
  Magar, V, Van Der Werf, JJ, Eidsvik, KJ, Guizien, K, Malarkey, J, Doucette, JS, Van Rijn, LC (ed.), Soulsby, RL (ed.), Hoekstra, P (ed.) & Davies, AG 2005, Comparison between 2DV sediment transport models and measurements of suspended sediment dynamics over full-scale ripples in oscillatory flows. in SANDPIT: Sand Transport and Morphology of Offshore Sand Mining Pits. 2005 edn, Aqua Publications.
• Net transport rates at Teignmouth, U.K.
  
  Soulsby, RL, Malarkey, J, Van Rijn, LC (ed.), Hoekstra, P (ed.) & Davies, AG 2005, Net transport rates at Teignmouth, U.K. in SANDPIT: Sand Transport and Morphology of Offshore Sand Mining Pits. 2005 edn, Aqua Publications.
• UWB 1DV sand transport model
  
  Malarkey, J, Van Rijn, LC (ed.), Soulsby, RL (ed.), Hoekstra, P (ed.) & Davies, AG (ed.) 2005, UWB 1DV sand transport model. in SANDPIT: Sand Transport and Morphology of Offshore Sand Mining Pits. 2005 edn, Aqua Publications, pp. 1-8.

2004

• An eddy viscosity formulation for oscillatory flow over vortex ripples
  
  Malarkey, J & Davies, AG 2004, 'An eddy viscosity formulation for oscillatory flow over vortex ripples', Journal of Geophysical Research - Oceans, vol. 109, no. C12, pp. C12016. https://doi.org/10.1029/2003JC002086
• Numerical and experimental study of wave-generated sheet flow
  
  O'Donoghue, T, Li, M, Malarkey, J, Pan, S, Davies, AG & O'Connor, BA 2004, 'Numerical and experimental study of wave-generated sheet flow' Paper presented at Coastal Engineering 2004, Proceedings of the 29th International Conference World Scientific, Singapore, 3/01/01, .

2003

• A non-iterative procedure for the Wiberg and Harris (1994) oscillatory sand ripple predictor.
  
  Malarkey, J & Davies, AG 2003, 'A non-iterative procedure for the Wiberg and Harris (1994) oscillatory sand ripple predictor.', Journal of Coastal Research, vol. 19, no. 3, pp. 738-739.
• A simple model of unsteady sheet flow sediment transport.
  
  Malarkey, J, Davies, AG & Li, Z 2003, 'A simple model of unsteady sheet flow sediment transport.', Coastal Engineering, vol. 48, no. 3, pp. 171-188. https://doi.org/10.1016/S0378-3839(03)00025-5
• On sea bed roughness variability in presence of a rippled bed
  
  Faraci, C, Malarkey, J, Foti, E, Davies, AG, Sanchez-Arcilla Conejo, A (ed.) & Bateman Pinzon, A (ed.) 2003, On sea bed roughness variability in presence of a rippled bed. in Proceedings of the RCEM Symposium 2003 2003: 3rd Symposium on River: Coastal and Estuarine Morphodynamics. 2003 edn, IAHR Secretariat, pp. 352-364, 3rd IAHR Symposium on River, Coastal and Estuarine Morphodynamics. Barcelona, 1-5 September 2003, 3/01/01.

2002

• Use of Routh's correction in the cloud-in-cell discrete vortex method
  
  Malarkey, J & Davies, A 2002, 'Use of Routh's correction in the cloud-in-cell discrete vortex method', Journal of Computational Physics, vol. 181, no. 2, pp. 753-759. https://doi.org/10.1006/jcph.2002.7163
• A simple model of oscillatory sheet flow
  
  Malarkey, J, Davies, AG & Li, Z 2002, 'A simple model of oscillatory sheet flow' Paper presented at Coastal Engineering 2002: solving coastal conundrums, Cardiff, United Kingdom, 7/07/02 - 12/07/02, .
• Discrete vortex modelling of oscillatory flow over ripples.
  
  Malarkey, J & Davies, AG 2002, 'Discrete vortex modelling of oscillatory flow over ripples.', Applied Ocean Research, vol. 24, no. 3, pp. 127-145. https://doi.org/10.1016/S0141-1187(02)00035-4

2001

• Flow structure and seasonality in the Hebridean slope current.
  
  Souza, AJ, Simpson, JH, Harikrishnan, M & Malarkey, J 2001, 'Flow structure and seasonality in the Hebridean slope current.', Oceanologica Acta, vol. 24, no. Supplement 1, pp. S63-S76. https://doi.org/10.1016/S0399-1784(00)01103-8
• A one–phase sheet flow model of sediment transport
  
  Malarkey, J, Davies, AG, Van Rijn, LC (ed.), Davies, AG (ed.) & Van De Graaff, JR (ed.) 2001, A one–phase sheet flow model of sediment transport. in SEDMOC: Sediment Transport Modelling in Marine Coastal Environments. 2001 edn, Aqua Publications, pp. 1-8.

1998

• Modelling wave-current interactions in rough turbulent bottom boundary layers
  
  Malarkey, J & Davies, A 1998, 'Modelling wave-current interactions in rough turbulent bottom boundary layers', Ocean Engineering, vol. 25, no. 2-3, pp. 119-141. https://doi.org/10.1016/S0029-8018(96)00062-5

• Marine Alliance for Science and Technology for Scotland